J5_4V9F_008
3D structure
- PDB id
- 4V9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 4V9F|1|0|U|2117, 4V9F|1|0|A|2465, 4V9F|1|0|G|2466, 4V9F|1|0|A|2467, 4V9F|1|0|A|2468
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08912.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V9F|1|0|U|2115
4V9F|1|0|U|2116
4V9F|1|0|U|2117
4V9F|1|0|A|2118
*
4V9F|1|0|U|2276
4V9F|1|0|U|2277
4V9F|1|0|U|2278
4V9F|1|0|G|2279
*
4V9F|1|0|C|2292
4V9F|1|0|G|2293
*
4V9F|1|0|C|2315
4V9F|1|0|G|2316
*
4V9F|1|0|C|2464
4V9F|1|0|A|2465
4V9F|1|0|G|2466
4V9F|1|0|A|2467
4V9F|1|0|A|2468
4V9F|1|0|A|2469
4V9F|1|0|A|2470
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L44e
- Chain A
- 50S ribosomal protein L2P
- Chain L
- 50S ribosomal protein L15P
- Chain M
- 50S ribosomal protein L15e
- Chain Q
- 50S ribosomal protein L21e
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