J5_4V9J_007

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

GGAACUCUGCAAGUUGG*UG*CC*GUGAACAGG*CGCUGUC

Length

37 nucleotides

Bulged bases

4V9J|1|BA|G|1758, 4V9J|1|BA|G|1763, 4V9J|1|BA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9J|1|BA|G|1666
4V9J|1|BA|G|1667
4V9J|1|BA|A|1668
4V9J|1|BA|A|1669
4V9J|1|BA|C|1670
4V9J|1|BA|U|1671
4V9J|1|BA|C|1672
4V9J|1|BA|U|1673
4V9J|1|BA|G|1674
4V9J|1|BA|C|1675
4V9J|1|BA|A|1676
4V9J|1|BA|A|1677
4V9J|1|BA|G|1678
4V9J|1|BA|U|1679
4V9J|1|BA|U|1680
4V9J|1|BA|G|1681
4V9J|1|BA|G|1682
*
4V9J|1|BA|U|1706
4V9J|1|BA|G|1707
*
4V9J|1|BA|C|1751
4V9J|1|BA|C|1752
*
4V9J|1|BA|G|1756
4V9J|1|BA|U|1757
4V9J|1|BA|G|1758
4V9J|1|BA|A|1759
4V9J|1|BA|A|1760
4V9J|1|BA|C|1761
4V9J|1|BA|A|1762
4V9J|1|BA|G|1763
4V9J|1|BA|G|1764
*
4V9J|1|BA|C|1988
4V9J|1|BA|G|1989
4V9J|1|BA|C|1990
4V9J|1|BA|U|1991
4V9J|1|BA|G|1992
4V9J|1|BA|U|1993
4V9J|1|BA|C|1994

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BE

50S ribosomal protein L3

Chain BO

50S ribosomal protein L14

Chain BT

50S ribosomal protein L19