J5_4V9K_003

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V9K|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9K_003 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1549

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V9K|1|BA|C|47
4V9K|1|BA|G|48
4V9K|1|BA|A|49
4V9K|1|BA|U|50
4V9K|1|BA|G|51
4V9K|1|BA|A|52
4V9K|1|BA|A|53
4V9K|1|BA|G|54
*
4V9K|1|BA|C|116
4V9K|1|BA|G|117
4V9K|1|BA|A|118
4V9K|1|BA|A|119
4V9K|1|BA|U|120
4V9K|1|BA|G|121
*
4V9K|1|BA|C|130
4V9K|1|BA|G|131
*
4V9K|1|BA|C|148
4V9K|1|BA|A|149
4V9K|1|BA|C|150
*
4V9K|1|BA|G|176
4V9K|1|BA|G|177
4V9K|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BX

50S ribosomal protein L23