J5_4V9O_028

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAUCAACCGAGAUU*AGCAG*CUAAAUAC

Length

42 nucleotides

Bulged bases

4V9O|1|GA|A|223, 4V9O|1|GA|C|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9O|1|GA|G|45
4V9O|1|GA|G|46
*
4V9O|1|GA|C|179
4V9O|1|GA|G|180
4V9O|1|GA|A|181
4V9O|1|GA|A|182
4V9O|1|GA|C|183
*
4V9O|1|GA|G|214
4V9O|1|GA|G|215
4V9O|1|GA|A|216
4V9O|1|GA|A|217
4V9O|1|GA|A|218
4V9O|1|GA|A|219
4V9O|1|GA|G|220
4V9O|1|GA|A|221
4V9O|1|GA|A|222
4V9O|1|GA|A|223
4V9O|1|GA|U|224
4V9O|1|GA|C|225
4V9O|1|GA|A|226
4V9O|1|GA|A|227
4V9O|1|GA|C|228
4V9O|1|GA|C|229
4V9O|1|GA|G|230
4V9O|1|GA|A|231
4V9O|1|GA|G|232
4V9O|1|GA|A|233
4V9O|1|GA|U|234
4V9O|1|GA|U|235
*
4V9O|1|GA|A|262
4V9O|1|GA|G|263
4V9O|1|GA|C|264
4V9O|1|GA|A|265
4V9O|1|GA|G|266
*
4V9O|1|GA|C|426
4V9O|1|GA|U|427
4V9O|1|GA|A|428
4V9O|1|GA|A|429
4V9O|1|GA|A|430
4V9O|1|GA|U|431
4V9O|1|GA|A|432
4V9O|1|GA|C|433

Current chains

Chain GA

23S rRNA

Nearby chains

Chain G2

50S ribosomal protein L34

Chain GL

50S ribosomal protein L15