J5_4V9O_036
3D structure
- PDB id
- 4V9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Control of ribosomal subunit rotation by elongation factor G
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V9O_036 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.0673
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V9O|1|HA|C|36
4V9O|1|HA|U|37
4V9O|1|HA|G|38
4V9O|1|HA|G|39
*
4V9O|1|HA|C|403
4V9O|1|HA|G|404
4V9O|1|HA|U|405
4V9O|1|HA|G|406
*
4V9O|1|HA|C|436
4V9O|1|HA|U|437
4V9O|1|HA|U|438
4V9O|1|HA|U|439
4V9O|1|HA|C|440
4V9O|1|HA|A|441
4V9O|1|HA|G|442
*
4V9O|1|HA|C|492
4V9O|1|HA|A|493
4V9O|1|HA|G|494
4V9O|1|HA|A|495
4V9O|1|HA|A|496
4V9O|1|HA|G|497
4V9O|1|HA|A|498
4V9O|1|HA|A|499
4V9O|1|HA|G|500
*
4V9O|1|HA|C|545
4V9O|1|HA|A|546
4V9O|1|HA|A|547
4V9O|1|HA|G|548
Current chains
- Chain HA
- 16S rRNA
Nearby chains
- Chain HD
- 30S ribosomal protein S4
- Chain HL
- 30S ribosomal protein S12
- Chain HV
- Elongation factor G
Coloring options: