J5_4V9O_038

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

4V9O|1|CA|A|2062, 4V9O|1|CA|A|2448, 4V9O|1|CA|U|2449, 4V9O|1|CA|U|2585, 4V9O|1|CA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9O|1|CA|G|2057
4V9O|1|CA|A|2058
4V9O|1|CA|A|2059
4V9O|1|CA|A|2060
4V9O|1|CA|G|2061
4V9O|1|CA|A|2062
4V9O|1|CA|C|2063
4V9O|1|CA|C|2064
*
4V9O|1|CA|G|2446
4V9O|1|CA|G|2447
4V9O|1|CA|A|2448
4V9O|1|CA|U|2449
4V9O|1|CA|A|2450
4V9O|1|CA|A|2451
4V9O|1|CA|C|2452
4V9O|1|CA|A|2453
*
4V9O|1|CA|U|2500
4V9O|1|CA|C|2501
4V9O|1|CA|G|2502
4V9O|1|CA|A|2503
4V9O|1|CA|U|2504
4V9O|1|CA|G|2505
4V9O|1|CA|U|2506
*
4V9O|1|CA|G|2583
4V9O|1|CA|U|2584
4V9O|1|CA|U|2585
4V9O|1|CA|U|2586
4V9O|1|CA|A|2587
4V9O|1|CA|G|2588
*
4V9O|1|CA|C|2606
4V9O|1|CA|G|2607
4V9O|1|CA|G|2608
4V9O|1|CA|U|2609
4V9O|1|CA|C|2610
4V9O|1|CA|C|2611

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C0

50S ribosomal protein L32

Chain CC

50S ribosomal protein L2

Chain CD

50S ribosomal protein L3

Chain CE

50S ribosomal protein L4

Chain CL

50S ribosomal protein L15

Chain CM

50S ribosomal protein L16

Chain CS

50S ribosomal protein L22