J5_4V9P_005

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

4V9P|1|AA|A|2062, 4V9P|1|AA|A|2448, 4V9P|1|AA|U|2449, 4V9P|1|AA|U|2585, 4V9P|1|AA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9P|1|AA|G|2057
4V9P|1|AA|A|2058
4V9P|1|AA|A|2059
4V9P|1|AA|A|2060
4V9P|1|AA|G|2061
4V9P|1|AA|A|2062
4V9P|1|AA|C|2063
4V9P|1|AA|C|2064
*
4V9P|1|AA|G|2446
4V9P|1|AA|G|2447
4V9P|1|AA|A|2448
4V9P|1|AA|U|2449
4V9P|1|AA|A|2450
4V9P|1|AA|A|2451
4V9P|1|AA|C|2452
4V9P|1|AA|A|2453
*
4V9P|1|AA|U|2500
4V9P|1|AA|C|2501
4V9P|1|AA|G|2502
4V9P|1|AA|A|2503
4V9P|1|AA|U|2504
4V9P|1|AA|G|2505
4V9P|1|AA|U|2506
*
4V9P|1|AA|G|2583
4V9P|1|AA|U|2584
4V9P|1|AA|U|2585
4V9P|1|AA|U|2586
4V9P|1|AA|A|2587
4V9P|1|AA|G|2588
*
4V9P|1|AA|C|2606
4V9P|1|AA|G|2607
4V9P|1|AA|G|2608
4V9P|1|AA|U|2609
4V9P|1|AA|C|2610
4V9P|1|AA|C|2611

Current chains

Chain AA

23S rRNA

Nearby chains

Chain A0

50S ribosomal protein L32

Chain AC

50S ribosomal protein L2

Chain AD

50S ribosomal protein L3

Chain AE

50S ribosomal protein L4

Chain AL

50S ribosomal protein L15

Chain AM

50S ribosomal protein L16

Chain AS

50S ribosomal protein L22