J5_4V9P_010

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4V9P|1|CA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9P_010 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0557

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V9P|1|CA|C|47
4V9P|1|CA|G|48
4V9P|1|CA|A|49
4V9P|1|CA|U|50
4V9P|1|CA|G|51
4V9P|1|CA|A|52
4V9P|1|CA|A|53
4V9P|1|CA|G|54
*
4V9P|1|CA|C|116
4V9P|1|CA|G|117
4V9P|1|CA|A|118
4V9P|1|CA|A|119
4V9P|1|CA|U|120
4V9P|1|CA|G|121
*
4V9P|1|CA|C|130
4V9P|1|CA|A|131
*
4V9P|1|CA|U|148
4V9P|1|CA|A|149
4V9P|1|CA|U|150
*
4V9P|1|CA|A|176
4V9P|1|CA|G|177
4V9P|1|CA|G|178

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L34