J5_4V9Q_011

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4V9Q|1|CA|C|271|||B, 4V9Q|1|CA|U|271|||D, 4V9Q|1|CA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9Q|1|CA|C|268
4V9Q|1|CA|U|269
4V9Q|1|CA|A|270|||A
4V9Q|1|CA|A|270|||B
4V9Q|1|CA|A|270|||C
4V9Q|1|CA|C|270|||D
*
4V9Q|1|CA|G|270|||X
4V9Q|1|CA|G|270|||Y
4V9Q|1|CA|G|270|||Z
4V9Q|1|CA|U|271|||A
4V9Q|1|CA|C|271|||B
4V9Q|1|CA|G|271|||C
4V9Q|1|CA|U|271|||D
4V9Q|1|CA|G|271
*
4V9Q|1|CA|C|366|||B
4V9Q|1|CA|G|370
4V9Q|1|CA|A|371
4V9Q|1|CA|G|372
4V9Q|1|CA|U|373
4V9Q|1|CA|A|374
4V9Q|1|CA|C|375
*
4V9Q|1|CA|G|399
4V9Q|1|CA|G|400
4V9Q|1|CA|A|401
4V9Q|1|CA|A|402
4V9Q|1|CA|U|403
4V9Q|1|CA|C|404
4V9Q|1|CA|U|405
4V9Q|1|CA|G|406
*
4V9Q|1|CA|U|421
4V9Q|1|CA|A|422
4V9Q|1|CA|A|423
4V9Q|1|CA|G|424

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CI

50S ribosomal protein L9

Chain CX

50S ribosomal protein L28