J5_4V9R_016

3D structure

PDB id

4V9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

4V9R|1|DA|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9R|1|DA|C|601
4V9R|1|DA|G|602
4V9R|1|DA|A|603
4V9R|1|DA|G|604
*
4V9R|1|DA|C|624
4V9R|1|DA|G|625
4V9R|1|DA|U|626
4V9R|1|DA|A|627
4V9R|1|DA|G|628
*
4V9R|1|DA|C|635
4V9R|1|DA|G|636
4V9R|1|DA|A|637
4V9R|1|DA|G|638
*
4V9R|1|DA|C|650
4V9R|1|DA|G|651
4V9R|1|DA|C|652
4V9R|1|DA|A|652|||A
4V9R|1|DA|A|652|||B
4V9R|1|DA|G|652|||C
*
4V9R|1|DA|C|652|||V
4V9R|1|DA|A|653
4V9R|1|DA|A|654
4V9R|1|DA|A|655
4V9R|1|DA|G|656

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D8

50S Ribosomal Protein L35

Chain DF

50S Ribosomal Protein L4

Chain DP

50S Ribosomal Protein L15