J5_4V9S_004

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4V9S|1|BA|U|288, 4V9S|1|BA|U|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9S|1|BA|C|257
4V9S|1|BA|U|258
4V9S|1|BA|A|259
4V9S|1|BA|A|260
4V9S|1|BA|A|261
4V9S|1|BA|C|262
*
4V9S|1|BA|G|282
4V9S|1|BA|G|283
4V9S|1|BA|G|284
4V9S|1|BA|U|285
4V9S|1|BA|C|286
4V9S|1|BA|G|287
4V9S|1|BA|U|288
4V9S|1|BA|G|289
*
4V9S|1|BA|C|396
4V9S|1|BA|G|397
4V9S|1|BA|A|398
4V9S|1|BA|G|399
4V9S|1|BA|U|400
4V9S|1|BA|A|401
4V9S|1|BA|C|402
*
4V9S|1|BA|G|426
4V9S|1|BA|G|427
4V9S|1|BA|A|428
4V9S|1|BA|A|429
4V9S|1|BA|U|430
4V9S|1|BA|C|431
4V9S|1|BA|U|432
4V9S|1|BA|G|433
*
4V9S|1|BA|U|448
4V9S|1|BA|A|449
4V9S|1|BA|A|450
4V9S|1|BA|G|451

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S Ribosomal Protein L28

Chain BI

50S Ribosomal Protein L9