J5_4V9S_011

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAAG*CGGACGGG*CAG*CAC*GGCAGC

Length

25 nucleotides

Bulged bases

4V9S|1|CA|A|109, 4V9S|1|CA|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9S|1|CA|G|57
4V9S|1|CA|C|58
4V9S|1|CA|A|59
4V9S|1|CA|A|60
4V9S|1|CA|G|61
*
4V9S|1|CA|C|106
4V9S|1|CA|G|107
4V9S|1|CA|G|108
4V9S|1|CA|A|109
4V9S|1|CA|C|110
4V9S|1|CA|G|111
4V9S|1|CA|G|112
4V9S|1|CA|G|113
*
4V9S|1|CA|C|314
4V9S|1|CA|A|315
4V9S|1|CA|G|316
*
4V9S|1|CA|C|337
4V9S|1|CA|A|338
4V9S|1|CA|C|339
*
4V9S|1|CA|G|350
4V9S|1|CA|G|351
4V9S|1|CA|C|352
4V9S|1|CA|A|353
4V9S|1|CA|G|354
4V9S|1|CA|C|355

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CP

30S Ribosomal Protein S16

Chain CT

30S Ribosomal Protein S20

Chain DO

50S Ribosomal Protein L14

Chain DT

50S Ribosomal Protein L19