J5_4W23_001

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAUU*AUAG

Length

36 nucleotides

Bulged bases

4W23|1|2|A|590, 4W23|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W23|1|2|C|30
4W23|1|2|U|31
4W23|1|2|U|32
4W23|1|2|G|33
4W23|1|2|U|34
*
4W23|1|2|A|521
4W23|1|2|A|522
4W23|1|2|A|523
4W23|1|2|U|524
4W23|1|2|A|525
4W23|1|2|A|526
4W23|1|2|C|527
*
4W23|1|2|G|558
4W23|1|2|G|559
4W23|1|2|A|560
4W23|1|2|A|561
4W23|1|2|U|562
4W23|1|2|G|563
4W23|1|2|A|564
4W23|1|2|G|565
*
4W23|1|2|C|585
4W23|1|2|G|586
4W23|1|2|A|587
4W23|1|2|G|588
4W23|1|2|G|589
4W23|1|2|A|590
4W23|1|2|U|591
4W23|1|2|C|592
4W23|1|2|C|593
4W23|1|2|A|594
4W23|1|2|U|595
4W23|1|2|U|596
*
4W23|1|2|A|641
4W23|1|2|U|642
4W23|1|2|A|643
4W23|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Ribosomal protein uS4

Chain X

Ribosomal protein uS12

Chain e

Ribosomal protein eS30