J5_4W23_002

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUGCAUGU*GCGAAUGGC*GAG*CACAUC*GAAGGCAGCAG

Length

38 nucleotides

Bulged bases

4W23|1|2|U|55, 4W23|1|2|A|92

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W23|1|2|C|49
4W23|1|2|A|50
4W23|1|2|U|51
4W23|1|2|G|52
4W23|1|2|C|53
4W23|1|2|A|54
4W23|1|2|U|55
4W23|1|2|G|56
4W23|1|2|U|57
*
4W23|1|2|G|88
4W23|1|2|C|89
4W23|1|2|G|90
4W23|1|2|A|91
4W23|1|2|A|92
4W23|1|2|U|93
4W23|1|2|G|94
4W23|1|2|G|95
4W23|1|2|C|96
*
4W23|1|2|G|434
4W23|1|2|A|435
4W23|1|2|G|436
*
4W23|1|2|C|457
4W23|1|2|A|458
4W23|1|2|C|459
4W23|1|2|A|460
4W23|1|2|U|461
4W23|1|2|C|462
*
4W23|1|2|G|467
4W23|1|2|A|468
4W23|1|2|A|469
4W23|1|2|G|470
4W23|1|2|G|471
4W23|1|2|C|472
4W23|1|2|A|473
4W23|1|2|G|474
4W23|1|2|C|475
4W23|1|2|A|476
4W23|1|2|G|477

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain G

Ribosomal protein eS6

Chain I

Ribosomal protein eS8

Chain J

Ribosomal protein uS4

Chain Y

Ribosomal protein eS24