J5_4W23_003

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCUCGCUCCUCUCCCACUU*AUGCCGACGGGCG*CGUGCAU*ACCUCGGGCCGAUC*GACG

Length

58 nucleotides

Bulged bases

4W23|1|2|U|128, 4W23|1|2|C|129, 4W23|1|2|G|130, 4W23|1|2|C|131, 4W23|1|2|U|132, 4W23|1|2|C|133, 4W23|1|2|C|134, 4W23|1|2|U|135, 4W23|1|2|C|136, 4W23|1|2|U|137, 4W23|1|2|C|138, 4W23|1|2|C|139, 4W23|1|2|C|142, 4W23|1|2|G|183, 4W23|1|2|U|305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W23|1|2|C|125
4W23|1|2|G|126
4W23|1|2|C|127
4W23|1|2|U|128
4W23|1|2|C|129
4W23|1|2|G|130
4W23|1|2|C|131
4W23|1|2|U|132
4W23|1|2|C|133
4W23|1|2|C|134
4W23|1|2|U|135
4W23|1|2|C|136
4W23|1|2|U|137
4W23|1|2|C|138
4W23|1|2|C|139
4W23|1|2|C|140
4W23|1|2|A|141
4W23|1|2|C|142
4W23|1|2|U|143
4W23|1|2|U|144
*
4W23|1|2|A|175
4W23|1|2|U|176
4W23|1|2|G|177
4W23|1|2|C|178
4W23|1|2|C|179
4W23|1|2|G|180
4W23|1|2|A|181
4W23|1|2|C|182
4W23|1|2|G|183
4W23|1|2|G|184
4W23|1|2|G|185
4W23|1|2|C|186
4W23|1|2|G|187
*
4W23|1|2|C|212
4W23|1|2|G|213
4W23|1|2|U|214
4W23|1|2|G|215
4W23|1|2|C|216
4W23|1|2|A|217
4W23|1|2|U|218
*
4W23|1|2|A|302
4W23|1|2|C|303
4W23|1|2|C|304
4W23|1|2|U|305
4W23|1|2|C|306
4W23|1|2|G|307
4W23|1|2|G|308
4W23|1|2|G|309
4W23|1|2|C|310
4W23|1|2|C|311
4W23|1|2|G|312
4W23|1|2|A|313
4W23|1|2|U|314
4W23|1|2|C|315
*
4W23|1|2|G|335
4W23|1|2|A|336
4W23|1|2|C|337
4W23|1|2|G|338

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain G

Ribosomal protein eS6

Chain I

Ribosomal protein eS8