J5_4W23_004

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUCUUGGGAGCG*CCCGCCG*CAUU*AUGGAAUAG*CAUGAU

Length

38 nucleotides

Bulged bases

4W23|1|2|C|687, 4W23|1|2|U|871, 4W23|1|2|A|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W23|1|2|A|685
4W23|1|2|U|686
4W23|1|2|C|687
4W23|1|2|U|688
4W23|1|2|U|689
4W23|1|2|G|690
4W23|1|2|G|691
4W23|1|2|G|692
4W23|1|2|A|693
4W23|1|2|G|694
4W23|1|2|C|695
4W23|1|2|G|696
*
4W23|1|2|C|734
4W23|1|2|C|735
4W23|1|2|C|736
4W23|1|2|G|737
4W23|1|2|C|738
4W23|1|2|C|739
4W23|1|2|G|744
*
4W23|1|2|C|797
4W23|1|2|A|798
4W23|1|2|U|799
4W23|1|2|U|800
*
4W23|1|2|A|865
4W23|1|2|U|866
4W23|1|2|G|867
4W23|1|2|G|868
4W23|1|2|A|869
4W23|1|2|A|870
4W23|1|2|U|871
4W23|1|2|A|872
4W23|1|2|G|873
*
4W23|1|2|C|912
4W23|1|2|A|913
4W23|1|2|U|914
4W23|1|2|G|915
4W23|1|2|A|916
4W23|1|2|U|917

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

Ribosomal protein eS7

Chain L

Ribosomal protein uS17

Chain N

Ribosomal protein uS15

Chain W

Ribosomal protein uS8

Chain X

Ribosomal protein uS12