J5_4W2E_006
3D structure
- PDB id
- 4W2E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAGUUGG*UG*CC*GUGAACAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 4W2E|1|A|G|1758, 4W2E|1|A|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4W2E_006 not in the Motif Atlas
- Homologous match to J5_9DFE_005
- Geometric discrepancy: 0.0713
- The information below is about J5_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
4W2E|1|A|G|1674
4W2E|1|A|C|1675
4W2E|1|A|A|1676
4W2E|1|A|A|1677
4W2E|1|A|G|1678
4W2E|1|A|U|1679
4W2E|1|A|U|1680
4W2E|1|A|G|1681
4W2E|1|A|G|1682
*
4W2E|1|A|U|1706
4W2E|1|A|G|1707
*
4W2E|1|A|C|1751
4W2E|1|A|C|1752
*
4W2E|1|A|G|1756
4W2E|1|A|U|1757
4W2E|1|A|G|1758
4W2E|1|A|A|1759
4W2E|1|A|A|1760
4W2E|1|A|C|1761
4W2E|1|A|A|1762
4W2E|1|A|G|1763
4W2E|1|A|G|1764
*
4W2E|1|A|C|1988
4W2E|1|A|G|1989
4W2E|1|A|C|1990
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L3
- Chain O
- 50S ribosomal protein L14
- Chain T
- 50S ribosomal protein L19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: