J5_4W2F_013

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4W2F|1|DA|U|272|||A, 4W2F|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W2F|1|DA|C|268
4W2F|1|DA|U|269
4W2F|1|DA|A|270
4W2F|1|DA|A|271
4W2F|1|DA|A|271|||A
4W2F|1|DA|C|271|||B
*
4W2F|1|DA|G|271|||V
4W2F|1|DA|G|271|||W
4W2F|1|DA|G|271|||X
4W2F|1|DA|U|271|||Y
4W2F|1|DA|C|271|||Z
4W2F|1|DA|G|272
4W2F|1|DA|U|272|||A
4W2F|1|DA|G|272|||B
*
4W2F|1|DA|C|366
4W2F|1|DA|G|370
4W2F|1|DA|A|371
4W2F|1|DA|G|372
4W2F|1|DA|U|373
4W2F|1|DA|A|374
4W2F|1|DA|C|375
*
4W2F|1|DA|G|399
4W2F|1|DA|G|400
4W2F|1|DA|A|401
4W2F|1|DA|A|402
4W2F|1|DA|U|403
4W2F|1|DA|C|404
4W2F|1|DA|U|405
4W2F|1|DA|G|406
*
4W2F|1|DA|U|421
4W2F|1|DA|A|422
4W2F|1|DA|A|423
4W2F|1|DA|G|424

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D1

50S Ribosomal Protein L28

Chain DI

50S Ribosomal Protein L9