J5_4W2G_013

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4W2G|1|DA|U|272|||A, 4W2G|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W2G|1|DA|C|268
4W2G|1|DA|U|269
4W2G|1|DA|A|270
4W2G|1|DA|A|271
4W2G|1|DA|A|271|||A
4W2G|1|DA|C|271|||B
*
4W2G|1|DA|G|271|||V
4W2G|1|DA|G|271|||W
4W2G|1|DA|G|271|||X
4W2G|1|DA|U|271|||Y
4W2G|1|DA|C|271|||Z
4W2G|1|DA|G|272
4W2G|1|DA|U|272|||A
4W2G|1|DA|G|272|||B
*
4W2G|1|DA|C|366
4W2G|1|DA|G|370
4W2G|1|DA|A|371
4W2G|1|DA|G|372
4W2G|1|DA|U|373
4W2G|1|DA|A|374
4W2G|1|DA|C|375
*
4W2G|1|DA|G|399
4W2G|1|DA|G|400
4W2G|1|DA|A|401
4W2G|1|DA|A|402
4W2G|1|DA|U|403
4W2G|1|DA|C|404
4W2G|1|DA|U|405
4W2G|1|DA|G|406
*
4W2G|1|DA|U|421
4W2G|1|DA|A|422
4W2G|1|DA|A|423
4W2G|1|DA|G|424

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D1

50S Ribosomal Protein L28

Chain DI

50S Ribosomal Protein L9