J5_4W2H_007
3D structure
- PDB id
- 4W2H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GCAAGUUGG*UG*CC*GUGAACAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 4W2H|1|BA|G|1789, 4W2H|1|BA|G|1794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4W2H_007 not in the Motif Atlas
- Homologous match to J5_9DFE_005
- Geometric discrepancy: 0.0433
- The information below is about J5_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
4W2H|1|BA|G|1721
4W2H|1|BA|C|1722
4W2H|1|BA|A|1723
4W2H|1|BA|A|1724
4W2H|1|BA|G|1725
4W2H|1|BA|U|1726
4W2H|1|BA|U|1727
4W2H|1|BA|G|1728
4W2H|1|BA|G|1729
*
4W2H|1|BA|U|1753
4W2H|1|BA|G|1754
*
4W2H|1|BA|C|1782
4W2H|1|BA|C|1783
*
4W2H|1|BA|G|1787
4W2H|1|BA|U|1788
4W2H|1|BA|G|1789
4W2H|1|BA|A|1790
4W2H|1|BA|A|1791
4W2H|1|BA|C|1792
4W2H|1|BA|A|1793
4W2H|1|BA|G|1794
4W2H|1|BA|G|1795
*
4W2H|1|BA|C|2010
4W2H|1|BA|G|2011
4W2H|1|BA|C|2012
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BE
- 50S Ribosomal Protein L3
- Chain BO
- 50S Ribosomal Protein L14
- Chain BT
- 50S Ribosomal Protein L19
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