J5_4W2H_008
3D structure
- PDB id
- 4W2H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 4W2H|1|BA|A|2084, 4W2H|1|BA|A|2460, 4W2H|1|BA|U|2461, 4W2H|1|BA|U|2621
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4W2H|1|BA|A|2079
4W2H|1|BA|A|2080
4W2H|1|BA|A|2081
4W2H|1|BA|A|2082
4W2H|1|BA|G|2083
4W2H|1|BA|A|2084
4W2H|1|BA|C|2085
4W2H|1|BA|C|2086
*
4W2H|1|BA|G|2458
4W2H|1|BA|G|2459
4W2H|1|BA|A|2460
4W2H|1|BA|U|2461
4W2H|1|BA|A|2462
4W2H|1|BA|A|2463
4W2H|1|BA|C|2464
4W2H|1|BA|A|2465
*
4W2H|1|BA|U|2512
4W2H|1|BA|C|2513
4W2H|1|BA|G|2514
4W2H|1|BA|A|2515
4W2H|1|BA|U|2516
4W2H|1|BA|G|2517
4W2H|1|BA|U|2518
4W2H|1|BA|C|2519
*
4W2H|1|BA|G|2594
4W2H|1|BA|G|2595
4W2H|1|BA|U|2596
4W2H|1|BA|U|2597
4W2H|1|BA|C|2598
4W2H|1|BA|A|2599
4W2H|1|BA|G|2600
*
4W2H|1|BA|C|2618
4W2H|1|BA|G|2619
4W2H|1|BA|G|2620
4W2H|1|BA|U|2621
4W2H|1|BA|C|2622
4W2H|1|BA|U|2623
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain AX
- Transfer RNA; tRNA
- Chain B0
- 50S Ribosomal Protein L27
- Chain B5
- 50S Ribosomal Protein L32
- Chain BD
- 50S Ribosomal Protein L2
- Chain BE
- 50S Ribosomal Protein L3
- Chain BF
- 50S Ribosomal Protein L4
- Chain BP
- 50S Ribosomal Protein L15
- Chain BQ
- 50S Ribosomal Protein L16
- Chain BW
- 50S Ribosomal Protein L22
Coloring options: