J5_4W2H_016

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAGC*GCAAAG

Length

26 nucleotides

Bulged bases

4W2H|1|DA|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W2H|1|DA|C|601
4W2H|1|DA|G|602
4W2H|1|DA|A|603
4W2H|1|DA|G|604
*
4W2H|1|DA|C|624
4W2H|1|DA|G|625
4W2H|1|DA|U|626
4W2H|1|DA|A|627
4W2H|1|DA|G|628
*
4W2H|1|DA|C|635
4W2H|1|DA|G|636
4W2H|1|DA|A|637
4W2H|1|DA|G|638
*
4W2H|1|DA|C|650
4W2H|1|DA|G|651
4W2H|1|DA|C|652
4W2H|1|DA|A|652|||A
4W2H|1|DA|A|652|||B
4W2H|1|DA|G|652|||C
4W2H|1|DA|C|652|||D
*
4W2H|1|DA|G|652|||U
4W2H|1|DA|C|652|||V
4W2H|1|DA|A|653
4W2H|1|DA|A|654
4W2H|1|DA|A|655
4W2H|1|DA|G|656

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D8

50S Ribosomal Protein L35

Chain DF

50S Ribosomal Protein L4

Chain DP

50S Ribosomal Protein L15