J5_4W2I_017
3D structure
- PDB id
- 4W2I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GCAAGUUGG*UG*CC*GUGAACAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 4W2I|1|DA|G|1758, 4W2I|1|DA|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4W2I_017 not in the Motif Atlas
- Homologous match to J5_9DFE_005
- Geometric discrepancy: 0.0491
- The information below is about J5_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
4W2I|1|DA|G|1674
4W2I|1|DA|C|1675
4W2I|1|DA|A|1676
4W2I|1|DA|A|1677
4W2I|1|DA|G|1678
4W2I|1|DA|U|1679
4W2I|1|DA|U|1680
4W2I|1|DA|G|1681
4W2I|1|DA|G|1682
*
4W2I|1|DA|U|1706
4W2I|1|DA|G|1707
*
4W2I|1|DA|C|1751
4W2I|1|DA|C|1752
*
4W2I|1|DA|G|1756
4W2I|1|DA|U|1757
4W2I|1|DA|G|1758
4W2I|1|DA|A|1759
4W2I|1|DA|A|1760
4W2I|1|DA|C|1761
4W2I|1|DA|A|1762
4W2I|1|DA|G|1763
4W2I|1|DA|G|1764
*
4W2I|1|DA|C|1988
4W2I|1|DA|G|1989
4W2I|1|DA|C|1990
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DE
- 50S Ribosomal Protein L3
- Chain DO
- 50S Ribosomal Protein L14
- Chain DT
- 50S Ribosomal Protein L19
Coloring options: