J5_4W4G_009

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

4W4G|1|RA|A|2062, 4W4G|1|RA|A|2448, 4W4G|1|RA|U|2449, 4W4G|1|RA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W4G|1|RA|A|2057
4W4G|1|RA|A|2058
4W4G|1|RA|A|2059
4W4G|1|RA|A|2060
4W4G|1|RA|G|2061
4W4G|1|RA|A|2062
4W4G|1|RA|C|2063
4W4G|1|RA|C|2064
*
4W4G|1|RA|G|2446
4W4G|1|RA|G|2447
4W4G|1|RA|A|2448
4W4G|1|RA|U|2449
4W4G|1|RA|A|2450
4W4G|1|RA|A|2451
4W4G|1|RA|C|2452
4W4G|1|RA|A|2453
*
4W4G|1|RA|U|2500
4W4G|1|RA|C|2501
4W4G|1|RA|G|2502
4W4G|1|RA|A|2503
4W4G|1|RA|U|2504
4W4G|1|RA|G|2505
4W4G|1|RA|U|2506
4W4G|1|RA|C|2507
*
4W4G|1|RA|G|2582
4W4G|1|RA|G|2583
4W4G|1|RA|U|2584
4W4G|1|RA|U|2585
4W4G|1|RA|C|2586
4W4G|1|RA|A|2587
4W4G|1|RA|G|2588
*
4W4G|1|RA|C|2606
4W4G|1|RA|G|2607
4W4G|1|RA|G|2608
4W4G|1|RA|U|2609
4W4G|1|RA|C|2610
4W4G|1|RA|U|2611

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QV

Transfer RNA; tRNA

Chain R0

50S ribosomal protein L27

Chain R5

50S ribosomal protein L32

Chain RD

50S ribosomal protein L2

Chain RE

50S ribosomal protein L3

Chain RF

50S ribosomal protein L4

Chain RP

50S ribosomal protein L15

Chain RW

50S ribosomal protein L22