J5_4WCE_006

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

GAAAGACCC*GGGAUAACA*UCGAUGUC*GGUUCAG*CGGUCC

Length

39 nucleotides

Bulged bases

4WCE|1|X|A|2089, 4WCE|1|X|A|2475, 4WCE|1|X|U|2612, 4WCE|1|X|U|2636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WCE|1|X|G|2084
4WCE|1|X|A|2085
4WCE|1|X|A|2086
4WCE|1|X|A|2087
4WCE|1|X|G|2088
4WCE|1|X|A|2089
4WCE|1|X|C|2090
4WCE|1|X|C|2091
4WCE|1|X|C|2092
*
4WCE|1|X|G|2472
4WCE|1|X|G|2473
4WCE|1|X|G|2474
4WCE|1|X|A|2475
4WCE|1|X|U|2476
4WCE|1|X|A|2477
4WCE|1|X|A|2478
4WCE|1|X|C|2479
4WCE|1|X|A|2480
*
4WCE|1|X|U|2527
4WCE|1|X|C|2528
4WCE|1|X|G|2529
4WCE|1|X|A|2530
4WCE|1|X|U|2531
4WCE|1|X|G|2532
4WCE|1|X|U|2533
4WCE|1|X|C|2534
*
4WCE|1|X|G|2609
4WCE|1|X|G|2610
4WCE|1|X|U|2611
4WCE|1|X|U|2612
4WCE|1|X|C|2613
4WCE|1|X|A|2614
4WCE|1|X|G|2615
*
4WCE|1|X|C|2633
4WCE|1|X|G|2634
4WCE|1|X|G|2635
4WCE|1|X|U|2636
4WCE|1|X|C|2637
4WCE|1|X|C|2638

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain B

50S ribosomal protein L3

Chain C

50S ribosomal protein L4

Chain J

50S ribosomal protein L16

Chain Z

50S ribosomal protein L32