J5_4WF1_013

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CGAUGAAGG*CCGAAUG*CA*UAU*AGG

Length

24 nucleotides

Bulged bases

4WF1|1|DA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WF1|1|DA|C|47
4WF1|1|DA|G|48
4WF1|1|DA|A|49
4WF1|1|DA|U|50
4WF1|1|DA|G|51
4WF1|1|DA|A|52
4WF1|1|DA|A|53
4WF1|1|DA|G|54
4WF1|1|DA|G|55
*
4WF1|1|DA|C|115
4WF1|1|DA|C|116
4WF1|1|DA|G|117
4WF1|1|DA|A|118
4WF1|1|DA|A|119
4WF1|1|DA|U|120
4WF1|1|DA|G|121
*
4WF1|1|DA|C|130
4WF1|1|DA|A|131
*
4WF1|1|DA|U|148
4WF1|1|DA|A|149
4WF1|1|DA|U|150
*
4WF1|1|DA|A|176
4WF1|1|DA|G|177
4WF1|1|DA|G|178

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34