J5_4WF1_017

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

4WF1|1|DA|A|2062, 4WF1|1|DA|A|2448, 4WF1|1|DA|U|2449, 4WF1|1|DA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WF1|1|DA|G|2057
4WF1|1|DA|A|2058
4WF1|1|DA|A|2059
4WF1|1|DA|A|2060
4WF1|1|DA|G|2061
4WF1|1|DA|A|2062
4WF1|1|DA|C|2063
4WF1|1|DA|C|2064
*
4WF1|1|DA|G|2446
4WF1|1|DA|G|2447
4WF1|1|DA|A|2448
4WF1|1|DA|U|2449
4WF1|1|DA|A|2450
4WF1|1|DA|A|2451
4WF1|1|DA|C|2452
4WF1|1|DA|A|2453
*
4WF1|1|DA|U|2500
4WF1|1|DA|C|2501
4WF1|1|DA|G|2502
4WF1|1|DA|A|2503
4WF1|1|DA|U|2504
4WF1|1|DA|G|2505
4WF1|1|DA|U|2506
*
4WF1|1|DA|G|2583
4WF1|1|DA|U|2584
4WF1|1|DA|U|2585
4WF1|1|DA|U|2586
4WF1|1|DA|A|2587
4WF1|1|DA|G|2588
*
4WF1|1|DA|C|2606
4WF1|1|DA|G|2607
4WF1|1|DA|G|2608
4WF1|1|DA|U|2609
4WF1|1|DA|C|2610
4WF1|1|DA|C|2611

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DC

50S ribosomal protein L2

Chain DD

50S ribosomal protein L3

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15

Chain DM

50S ribosomal protein L16

Chain DS

50S ribosomal protein L22