J5_4WF9_001

3D structure

PDB id

4WF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

CAAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

4WF9|1|X|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4WF9|1|X|C|47
4WF9|1|X|A|48
4WF9|1|X|A|49
4WF9|1|X|U|50
4WF9|1|X|G|51
4WF9|1|X|A|52
4WF9|1|X|A|53
4WF9|1|X|G|54
*
4WF9|1|X|C|115
4WF9|1|X|G|116
4WF9|1|X|A|117
4WF9|1|X|A|118
4WF9|1|X|U|119
4WF9|1|X|G|120
*
4WF9|1|X|C|129
4WF9|1|X|A|130
*
4WF9|1|X|U|149
4WF9|1|X|A|150
4WF9|1|X|U|151
*
4WF9|1|X|A|178
4WF9|1|X|A|179
4WF9|1|X|G|180

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Q

50S ribosomal protein L23