J5_4WF9_005

3D structure

PDB id

4WF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GCAAAAUGA*UG*CC*GUGAAUAGG*CAC

Length

25 nucleotides

Bulged bases

4WF9|1|X|G|1785, 4WF9|1|X|G|1790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4WF9|1|X|G|1718
4WF9|1|X|C|1719
4WF9|1|X|A|1720
4WF9|1|X|A|1721
4WF9|1|X|A|1722
4WF9|1|X|A|1723
4WF9|1|X|U|1724
4WF9|1|X|G|1725
4WF9|1|X|A|1726
*
4WF9|1|X|U|1750
4WF9|1|X|G|1751
*
4WF9|1|X|C|1778
4WF9|1|X|C|1779
*
4WF9|1|X|G|1783
4WF9|1|X|U|1784
4WF9|1|X|G|1785
4WF9|1|X|A|1786
4WF9|1|X|A|1787
4WF9|1|X|U|1788
4WF9|1|X|A|1789
4WF9|1|X|G|1790
4WF9|1|X|G|1791
*
4WF9|1|X|C|2015
4WF9|1|X|A|2016
4WF9|1|X|C|2017

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14

Chain M

50S ribosomal protein L19