J5_4WF9_006

3D structure

PDB id

4WF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCC

Length

37 nucleotides

Bulged bases

4WF9|1|X|A|2089, 4WF9|1|X|A|2475, 4WF9|1|X|U|2476, 4WF9|1|X|U|2612, 4WF9|1|X|U|2636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WF9|1|X|G|2084
4WF9|1|X|A|2085
4WF9|1|X|A|2086
4WF9|1|X|A|2087
4WF9|1|X|G|2088
4WF9|1|X|A|2089
4WF9|1|X|C|2090
4WF9|1|X|C|2091
*
4WF9|1|X|G|2473
4WF9|1|X|G|2474
4WF9|1|X|A|2475
4WF9|1|X|U|2476
4WF9|1|X|A|2477
4WF9|1|X|A|2478
4WF9|1|X|C|2479
4WF9|1|X|A|2480
*
4WF9|1|X|U|2527
4WF9|1|X|C|2528
4WF9|1|X|G|2529
4WF9|1|X|A|2530
4WF9|1|X|U|2531
4WF9|1|X|G|2532
4WF9|1|X|U|2533
4WF9|1|X|C|2534
*
4WF9|1|X|G|2609
4WF9|1|X|G|2610
4WF9|1|X|U|2611
4WF9|1|X|U|2612
4WF9|1|X|C|2613
4WF9|1|X|A|2614
4WF9|1|X|G|2615
*
4WF9|1|X|C|2633
4WF9|1|X|G|2634
4WF9|1|X|G|2635
4WF9|1|X|U|2636
4WF9|1|X|C|2637
4WF9|1|X|C|2638

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain B

50S ribosomal protein L3

Chain C

50S ribosomal protein L4

Chain J

50S ribosomal protein L16

Chain Z

50S ribosomal protein L32