J5_4WFA_005

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCC

Length

37 nucleotides

Bulged bases

4WFA|1|X|A|2089, 4WFA|1|X|A|2475, 4WFA|1|X|U|2612, 4WFA|1|X|U|2636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WFA|1|X|G|2084
4WFA|1|X|A|2085
4WFA|1|X|A|2086
4WFA|1|X|A|2087
4WFA|1|X|G|2088
4WFA|1|X|A|2089
4WFA|1|X|C|2090
4WFA|1|X|C|2091
*
4WFA|1|X|G|2473
4WFA|1|X|G|2474
4WFA|1|X|A|2475
4WFA|1|X|U|2476
4WFA|1|X|A|2477
4WFA|1|X|A|2478
4WFA|1|X|C|2479
4WFA|1|X|A|2480
*
4WFA|1|X|U|2527
4WFA|1|X|C|2528
4WFA|1|X|G|2529
4WFA|1|X|A|2530
4WFA|1|X|U|2531
4WFA|1|X|G|2532
4WFA|1|X|U|2533
4WFA|1|X|C|2534
*
4WFA|1|X|G|2609
4WFA|1|X|G|2610
4WFA|1|X|U|2611
4WFA|1|X|U|2612
4WFA|1|X|C|2613
4WFA|1|X|A|2614
4WFA|1|X|G|2615
*
4WFA|1|X|C|2633
4WFA|1|X|G|2634
4WFA|1|X|G|2635
4WFA|1|X|U|2636
4WFA|1|X|C|2637
4WFA|1|X|C|2638

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain B

50S ribosomal protein L3

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain J

50S ribosomal protein L16

Chain Z

50S ribosomal protein L32