J5_4WFB_005

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCC

Length

37 nucleotides

Bulged bases

4WFB|1|X|A|2089, 4WFB|1|X|A|2475, 4WFB|1|X|U|2476, 4WFB|1|X|U|2636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WFB|1|X|G|2084
4WFB|1|X|A|2085
4WFB|1|X|A|2086
4WFB|1|X|A|2087
4WFB|1|X|G|2088
4WFB|1|X|A|2089
4WFB|1|X|C|2090
4WFB|1|X|C|2091
*
4WFB|1|X|G|2473
4WFB|1|X|G|2474
4WFB|1|X|A|2475
4WFB|1|X|U|2476
4WFB|1|X|A|2477
4WFB|1|X|A|2478
4WFB|1|X|C|2479
4WFB|1|X|A|2480
*
4WFB|1|X|U|2527
4WFB|1|X|C|2528
4WFB|1|X|G|2529
4WFB|1|X|A|2530
4WFB|1|X|U|2531
4WFB|1|X|G|2532
4WFB|1|X|U|2533
4WFB|1|X|C|2534
*
4WFB|1|X|G|2609
4WFB|1|X|G|2610
4WFB|1|X|U|2611
4WFB|1|X|U|2612
4WFB|1|X|C|2613
4WFB|1|X|A|2614
4WFB|1|X|G|2615
*
4WFB|1|X|C|2633
4WFB|1|X|G|2634
4WFB|1|X|G|2635
4WFB|1|X|U|2636
4WFB|1|X|C|2637
4WFB|1|X|C|2638

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain B

50S ribosomal protein L3

Chain C

50S ribosomal protein L4

Chain J

50S ribosomal protein L16

Chain Z

50S ribosomal protein L32