J5_4WOI_010
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AGG
- Length
- 22 nucleotides
- Bulged bases
- 4WOI|1|CA|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4WOI_010 not in the Motif Atlas
- Homologous match to J5_5J7L_013
- Geometric discrepancy: 0.0659
- The information below is about J5_5J7L_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4WOI|1|CA|C|47
4WOI|1|CA|G|48
4WOI|1|CA|A|49
4WOI|1|CA|U|50
4WOI|1|CA|G|51
4WOI|1|CA|A|52
4WOI|1|CA|A|53
4WOI|1|CA|G|54
*
4WOI|1|CA|C|116
4WOI|1|CA|G|117
4WOI|1|CA|A|118
4WOI|1|CA|A|119
4WOI|1|CA|U|120
4WOI|1|CA|G|121
*
4WOI|1|CA|C|130
4WOI|1|CA|A|131
*
4WOI|1|CA|U|148
4WOI|1|CA|A|149
4WOI|1|CA|U|150
*
4WOI|1|CA|A|176
4WOI|1|CA|G|177
4WOI|1|CA|G|178
Current chains
- Chain CA
- 23S ribosomal RNA
Nearby chains
- Chain C2
- 50S ribosomal protein L34
Coloring options: