J5_4WOI_017
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUGG*CGUG*CUUUC*GAAG*CAAG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4WOI_017 not in the Motif Atlas
- Homologous match to J5_5J7L_001
- Geometric discrepancy: 0.0756
- The information below is about J5_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_92941.1
- Basepair signature
- cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
4WOI|1|DA|C|36
4WOI|1|DA|U|37
4WOI|1|DA|G|38
4WOI|1|DA|G|39
*
4WOI|1|DA|C|403
4WOI|1|DA|G|404
4WOI|1|DA|U|405
4WOI|1|DA|G|406
*
4WOI|1|DA|C|436
4WOI|1|DA|U|437
4WOI|1|DA|U|438
4WOI|1|DA|U|439
4WOI|1|DA|C|440
*
4WOI|1|DA|G|497
4WOI|1|DA|A|498
4WOI|1|DA|A|499
4WOI|1|DA|G|500
*
4WOI|1|DA|C|545
4WOI|1|DA|A|546
4WOI|1|DA|A|547
4WOI|1|DA|G|548
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DD
- 30S ribosomal protein S4
- Chain DL
- 30S ribosomal protein S12
Coloring options: