J5_4WOI_019

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCAAG*CGGACGGG*CAC*GAC*GGCAGC

Length

25 nucleotides

Bulged bases

4WOI|1|DA|A|109, 4WOI|1|DA|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WOI|1|DA|G|57
4WOI|1|DA|C|58
4WOI|1|DA|A|59
4WOI|1|DA|A|60
4WOI|1|DA|G|61
*
4WOI|1|DA|C|106
4WOI|1|DA|G|107
4WOI|1|DA|G|108
4WOI|1|DA|A|109
4WOI|1|DA|C|110
4WOI|1|DA|G|111
4WOI|1|DA|G|112
4WOI|1|DA|G|113
*
4WOI|1|DA|C|314
4WOI|1|DA|A|315
4WOI|1|DA|C|316
*
4WOI|1|DA|G|337
4WOI|1|DA|A|338
4WOI|1|DA|C|339
*
4WOI|1|DA|G|350
4WOI|1|DA|G|351
4WOI|1|DA|C|352
4WOI|1|DA|A|353
4WOI|1|DA|G|354
4WOI|1|DA|C|355

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain CK

50S ribosomal protein L14

Chain CP

50S ribosomal protein L19

Chain DP

30S ribosomal protein S16

Chain DT

30S ribosomal protein S20