J5_4WQ1_009

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGU*GUUCAG*CGGUCU

Length

35 nucleotides

Bulged bases

4WQ1|1|14|A|2062, 4WQ1|1|14|A|2448, 4WQ1|1|14|U|2449, 4WQ1|1|14|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WQ1|1|14|A|2057
4WQ1|1|14|A|2058
4WQ1|1|14|A|2059
4WQ1|1|14|A|2060
4WQ1|1|14|G|2061
4WQ1|1|14|A|2062
4WQ1|1|14|C|2063
4WQ1|1|14|C|2064
*
4WQ1|1|14|G|2446
4WQ1|1|14|G|2447
4WQ1|1|14|A|2448
4WQ1|1|14|U|2449
4WQ1|1|14|A|2450
4WQ1|1|14|A|2451
4WQ1|1|14|C|2452
4WQ1|1|14|A|2453
*
4WQ1|1|14|U|2500
4WQ1|1|14|C|2501
4WQ1|1|14|G|2502
4WQ1|1|14|A|2503
4WQ1|1|14|U|2504
4WQ1|1|14|G|2505
4WQ1|1|14|U|2506
*
4WQ1|1|14|G|2583
4WQ1|1|14|U|2584
4WQ1|1|14|U|2585
4WQ1|1|14|C|2586
4WQ1|1|14|A|2587
4WQ1|1|14|G|2588
*
4WQ1|1|14|C|2606
4WQ1|1|14|G|2607
4WQ1|1|14|G|2608
4WQ1|1|14|U|2609
4WQ1|1|14|C|2610
4WQ1|1|14|U|2611

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1L

Transfer RNA; tRNA

Chain 29

50S ribosomal protein L3

Chain 2L

Transfer RNA; tRNA

Chain 39

50S ribosomal protein L4

Chain A5

50S ribosomal protein L22

Chain J5

50S ribosomal protein L32