J5_4WQ1_021

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

G(4SU)UC*GAG*CCG*CUUCG*CC

Length

17 nucleotides

Bulged bases

4WQ1|1|1K|4SU|8, 4WQ1|1|1K|U|9, 4WQ1|1|1K|C|57

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WQ1_021 not in the Motif Atlas

Homologous match to J5_3ZGZ_001

Geometric discrepancy: 0.5198

The information below is about J5_3ZGZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_20390.2

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4WQ1|1|1K|G|7
4WQ1|1|1K|4SU|8
4WQ1|1|1K|U|9
4WQ1|1|1K|C|10
*
4WQ1|1|1K|G|26
4WQ1|1|1K|A|27
4WQ1|1|1K|G|28
*
4WQ1|1|1K|C|44
4WQ1|1|1K|C|45
4WQ1|1|1K|G|46
*
4WQ1|1|1K|C|54
4WQ1|1|1K|U|55
4WQ1|1|1K|U|56
4WQ1|1|1K|C|57
4WQ1|1|1K|G|58
*
4WQ1|1|1K|C|74
4WQ1|1|1K|C|75

Current chains

Chain 1K

tRNA-Tyr

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA