Loop J5_4WRA

3D structure

PDB id: 4WRA (explore in PDB, NAKB, or RNA 3D Hub)
Description: Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.05 Å

Loop

Sequence: AAAAGACCC*GGGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
Length: 39 nucleotides
Bulged bases: 4WRA|1|14|A|2062, 4WRA|1|14|A|2448, 4WRA|1|14|U|2449, 4WRA|1|14|U|2609
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4WRA|1|14|A|2057
4WRA|1|14|A|2058
4WRA|1|14|A|2059
4WRA|1|14|A|2060
4WRA|1|14|G|2061
4WRA|1|14|A|2062
4WRA|1|14|C|2063
4WRA|1|14|C|2064
4WRA|1|14|C|2065
*
4WRA|1|14|G|2445
4WRA|1|14|G|2446
4WRA|1|14|G|2447
4WRA|1|14|A|2448
4WRA|1|14|U|2449
4WRA|1|14|A|2450
4WRA|1|14|A|2451
4WRA|1|14|C|2452
4WRA|1|14|A|2453
*
4WRA|1|14|U|2500
4WRA|1|14|C|2501
4WRA|1|14|G|2502
4WRA|1|14|A|2503
4WRA|1|14|U|2504
4WRA|1|14|G|2505
4WRA|1|14|U|2506
4WRA|1|14|C|2507
*
4WRA|1|14|G|2582
4WRA|1|14|G|2583
4WRA|1|14|U|2584
4WRA|1|14|U|2585
4WRA|1|14|C|2586
4WRA|1|14|A|2587
4WRA|1|14|G|2588
*
4WRA|1|14|C|2606
4WRA|1|14|G|2607
4WRA|1|14|G|2608
4WRA|1|14|U|2609
4WRA|1|14|C|2610
4WRA|1|14|U|2611

Current chains

Chain 14: 23S ribosomal RNA

Nearby chains

Chain 19: 50S ribosomal protein L2
Chain 1L: Transfer RNA; tRNA
Chain 29: 50S ribosomal protein L3
Chain 2L: Transfer RNA; tRNA
Chain 35: 50S ribosomal protein L15
Chain 39: 50S ribosomal protein L4
Chain A5: 50S ribosomal protein L22
Chain J5: 50S ribosomal protein L32

J5_4WRA_008