J5_4WSD_010

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCUGG*CUUG*CUGAAC*GGUAAUAG*CGAGC

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSD|1|1G|G|35
4WSD|1|1G|C|36
4WSD|1|1G|U|37
4WSD|1|1G|G|38
4WSD|1|1G|G|39
*
4WSD|1|1G|C|403
4WSD|1|1G|U|404
4WSD|1|1G|U|405
4WSD|1|1G|G|406
*
4WSD|1|1G|C|436
4WSD|1|1G|U|437
4WSD|1|1G|G|438
4WSD|1|1G|A|439
4WSD|1|1G|A|440
4WSD|1|1G|C|442
*
4WSD|1|1G|G|492
4WSD|1|1G|G|493
4WSD|1|1G|U|494
4WSD|1|1G|A|495
4WSD|1|1G|A|496
4WSD|1|1G|U|497
4WSD|1|1G|A|498
4WSD|1|1G|G|500
*
4WSD|1|1G|C|545
4WSD|1|1G|G|546
4WSD|1|1G|A|547
4WSD|1|1G|G|548
4WSD|1|1G|C|549

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 32

30S ribosomal protein S4

Chain 3A

30S ribosomal protein S12