3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
AAAAGACCC*GGGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
Length
39 nucleotides
Bulged bases
4WSD|1|1H|A|2448, 4WSD|1|1H|U|2609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4WSD|1|1H|A|2057
4WSD|1|1H|A|2058
4WSD|1|1H|A|2059
4WSD|1|1H|A|2060
4WSD|1|1H|G|2061
4WSD|1|1H|A|2062
4WSD|1|1H|C|2063
4WSD|1|1H|C|2064
4WSD|1|1H|C|2065
*
4WSD|1|1H|G|2445
4WSD|1|1H|G|2446
4WSD|1|1H|G|2447
4WSD|1|1H|A|2448
4WSD|1|1H|U|2449
4WSD|1|1H|A|2450
4WSD|1|1H|A|2451
4WSD|1|1H|C|2452
4WSD|1|1H|A|2453
*
4WSD|1|1H|U|2500
4WSD|1|1H|C|2501
4WSD|1|1H|G|2502
4WSD|1|1H|A|2503
4WSD|1|1H|U|2504
4WSD|1|1H|G|2505
4WSD|1|1H|U|2506
4WSD|1|1H|C|2507
*
4WSD|1|1H|G|2582
4WSD|1|1H|G|2583
4WSD|1|1H|U|2584
4WSD|1|1H|U|2585
4WSD|1|1H|C|2586
4WSD|1|1H|A|2587
4WSD|1|1H|G|2588
*
4WSD|1|1H|C|2606
4WSD|1|1H|G|2607
4WSD|1|1H|G|2608
4WSD|1|1H|U|2609
4WSD|1|1H|C|2610
4WSD|1|1H|U|2611

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 11
50S ribosomal protein L2
Chain 1K
Transfer RNA; tRNA
Chain 21
50S ribosomal protein L3
Chain 2K
Transfer RNA; tRNA
Chain 31
50S ribosomal protein L4
Chain 78
50S ribosomal protein L15
Chain E8
50S ribosomal protein L22
Chain N8
50S ribosomal protein L32

Coloring options:

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