J5_4WSD_018
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- AAAAGACCC*GGGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 39 nucleotides
- Bulged bases
- 4WSD|1|1H|A|2448, 4WSD|1|1H|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4WSD|1|1H|A|2057
4WSD|1|1H|A|2058
4WSD|1|1H|A|2059
4WSD|1|1H|A|2060
4WSD|1|1H|G|2061
4WSD|1|1H|A|2062
4WSD|1|1H|C|2063
4WSD|1|1H|C|2064
4WSD|1|1H|C|2065
*
4WSD|1|1H|G|2445
4WSD|1|1H|G|2446
4WSD|1|1H|G|2447
4WSD|1|1H|A|2448
4WSD|1|1H|U|2449
4WSD|1|1H|A|2450
4WSD|1|1H|A|2451
4WSD|1|1H|C|2452
4WSD|1|1H|A|2453
*
4WSD|1|1H|U|2500
4WSD|1|1H|C|2501
4WSD|1|1H|G|2502
4WSD|1|1H|A|2503
4WSD|1|1H|U|2504
4WSD|1|1H|G|2505
4WSD|1|1H|U|2506
4WSD|1|1H|C|2507
*
4WSD|1|1H|G|2582
4WSD|1|1H|G|2583
4WSD|1|1H|U|2584
4WSD|1|1H|U|2585
4WSD|1|1H|C|2586
4WSD|1|1H|A|2587
4WSD|1|1H|G|2588
*
4WSD|1|1H|C|2606
4WSD|1|1H|G|2607
4WSD|1|1H|G|2608
4WSD|1|1H|U|2609
4WSD|1|1H|C|2610
4WSD|1|1H|U|2611
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L2
- Chain 1K
- Transfer RNA; tRNA
- Chain 21
- 50S ribosomal protein L3
- Chain 2K
- Transfer RNA; tRNA
- Chain 31
- 50S ribosomal protein L4
- Chain 78
- 50S ribosomal protein L15
- Chain E8
- 50S ribosomal protein L22
- Chain N8
- 50S ribosomal protein L32
Coloring options: