Loop J5_4WSM

3D structure

PDB id: 4WSM (explore in PDB, NAKB, or RNA 3D Hub)
Description: Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å

Loop

Sequence: AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
Length: 37 nucleotides
Bulged bases: 4WSM|1|14|A|2062, 4WSM|1|14|A|2448, 4WSM|1|14|U|2449, 4WSM|1|14|U|2506, 4WSM|1|14|U|2609
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4WSM|1|14|A|2057
4WSM|1|14|A|2058
4WSM|1|14|A|2059
4WSM|1|14|A|2060
4WSM|1|14|G|2061
4WSM|1|14|A|2062
4WSM|1|14|C|2063
4WSM|1|14|C|2064
*
4WSM|1|14|G|2446
4WSM|1|14|G|2447
4WSM|1|14|A|2448
4WSM|1|14|U|2449
4WSM|1|14|A|2450
4WSM|1|14|A|2451
4WSM|1|14|C|2452
4WSM|1|14|A|2453
*
4WSM|1|14|U|2500
4WSM|1|14|C|2501
4WSM|1|14|G|2502
4WSM|1|14|A|2503
4WSM|1|14|U|2504
4WSM|1|14|G|2505
4WSM|1|14|U|2506
4WSM|1|14|C|2507
*
4WSM|1|14|G|2582
4WSM|1|14|G|2583
4WSM|1|14|U|2584
4WSM|1|14|U|2585
4WSM|1|14|C|2586
4WSM|1|14|A|2587
4WSM|1|14|G|2588
*
4WSM|1|14|C|2606
4WSM|1|14|G|2607
4WSM|1|14|G|2608
4WSM|1|14|U|2609
4WSM|1|14|C|2610
4WSM|1|14|U|2611

Current chains

Chain 14: 23S ribosomal RNA

Nearby chains

Chain 19: 50S ribosomal protein L2
Chain 1L: Transfer RNA; tRNA
Chain 29: 50S ribosomal protein L3
Chain 2L: Transfer RNA; tRNA
Chain 35: 50S ribosomal protein L15
Chain 39: 50S ribosomal protein L4
Chain 45: 50S ribosomal protein L16
Chain A5: 50S ribosomal protein L22
Chain J5: 50S ribosomal protein L32

J5_4WSM_008