J5_4WZD_025

3D structure

PDB id

4WZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with cognate tRNA-Tyr in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGU*GUUCAG*CGGUCU

Length

35 nucleotides

Bulged bases

4WZD|1|1H|A|2448||||P_1, 4WZD|1|1H|U|2449||||P_1, 4WZD|1|1H|U|2585||||P_1, 4WZD|1|1H|U|2609||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WZD|1|1H|A|2057||||P_1
4WZD|1|1H|A|2058||||P_1
4WZD|1|1H|A|2059||||P_1
4WZD|1|1H|A|2060||||P_1
4WZD|1|1H|G|2061||||P_1
4WZD|1|1H|A|2062||||P_1
4WZD|1|1H|C|2063||||P_1
4WZD|1|1H|C|2064||||P_1
*
4WZD|1|1H|G|2446||||P_1
4WZD|1|1H|G|2447||||P_1
4WZD|1|1H|A|2448||||P_1
4WZD|1|1H|U|2449||||P_1
4WZD|1|1H|A|2450||||P_1
4WZD|1|1H|A|2451||||P_1
4WZD|1|1H|C|2452||||P_1
4WZD|1|1H|A|2453||||P_1
*
4WZD|1|1H|U|2500||||P_1
4WZD|1|1H|C|2501||||P_1
4WZD|1|1H|G|2502||||P_1
4WZD|1|1H|A|2503||||P_1
4WZD|1|1H|U|2504||||P_1
4WZD|1|1H|G|2505||||P_1
4WZD|1|1H|U|2506||||P_1
*
4WZD|1|1H|G|2583||||P_1
4WZD|1|1H|U|2584||||P_1
4WZD|1|1H|U|2585||||P_1
4WZD|1|1H|C|2586||||P_1
4WZD|1|1H|A|2587||||P_1
4WZD|1|1H|G|2588||||P_1
*
4WZD|1|1H|C|2606||||P_1
4WZD|1|1H|G|2607||||P_1
4WZD|1|1H|G|2608||||P_1
4WZD|1|1H|U|2609||||P_1
4WZD|1|1H|C|2610||||P_1
4WZD|1|1H|U|2611||||P_1

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 21

50S ribosomal protein L3

Chain 2K

Transfer RNA; tRNA

Chain 31

50S ribosomal protein L4

Chain 88

50S ribosomal protein L16

Chain E8

50S ribosomal protein L22

Chain I8

50S ribosomal protein L27

Chain N8

50S ribosomal protein L32