J5_4WZD_026

3D structure

PDB id

4WZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with cognate tRNA-Tyr in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

G(4SU)UC*GAG*CCG*CUUCG*CC

Length

17 nucleotides

Bulged bases

4WZD|1|3K|4SU|8||||P_1, 4WZD|1|3K|U|9||||P_1

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WZD_026 not in the Motif Atlas

Homologous match to J5_3ZGZ_001

Geometric discrepancy: 0.525

The information below is about J5_3ZGZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_20390.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4WZD|1|3K|G|7||||P_1
4WZD|1|3K|4SU|8||||P_1
4WZD|1|3K|U|9||||P_1
4WZD|1|3K|C|10||||P_1
*
4WZD|1|3K|G|26||||P_1
4WZD|1|3K|A|27||||P_1
4WZD|1|3K|G|28||||P_1
*
4WZD|1|3K|C|44||||P_1
4WZD|1|3K|C|45||||P_1
4WZD|1|3K|G|46||||P_1
*
4WZD|1|3K|C|54||||P_1
4WZD|1|3K|U|55||||P_1
4WZD|1|3K|U|56||||P_1
4WZD|1|3K|C|57||||P_1
4WZD|1|3K|G|58||||P_1
*
4WZD|1|3K|C|74||||P_1
4WZD|1|3K|C|75||||P_1

Current chains

Chain 3K

tRNA-Tyr

Nearby chains

Chain 2I

30S ribosomal protein S11

Chain 6E

30S ribosomal protein S7