J5_4Y4P_014

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAGC*GCAAAG

Length

26 nucleotides

Bulged bases

4Y4P|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4P|1|2A|C|601
4Y4P|1|2A|G|602
4Y4P|1|2A|A|603
4Y4P|1|2A|G|604
*
4Y4P|1|2A|C|624
4Y4P|1|2A|G|625
4Y4P|1|2A|U|626
4Y4P|1|2A|A|627
4Y4P|1|2A|G|628
*
4Y4P|1|2A|C|635
4Y4P|1|2A|G|636
4Y4P|1|2A|A|637
4Y4P|1|2A|G|638
*
4Y4P|1|2A|C|650
4Y4P|1|2A|G|651
4Y4P|1|2A|C|652
4Y4P|1|2A|A|652|||A
4Y4P|1|2A|A|652|||B
4Y4P|1|2A|G|652|||C
4Y4P|1|2A|C|652|||D
*
4Y4P|1|2A|G|652|||U
4Y4P|1|2A|C|652|||V
4Y4P|1|2A|A|653
4Y4P|1|2A|A|654
4Y4P|1|2A|A|655
4Y4P|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15