J5_4Y4P_017
3D structure
- PDB id
- 4Y4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4Y4P|1|2A|U|2076, 4Y4P|1|2A|G|2428, 4Y4P|1|2A|G|2429, 4Y4P|1|2A|A|2430, 4Y4P|1|2A|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4Y4P|1|2A|U|2074
4Y4P|1|2A|U|2075
4Y4P|1|2A|U|2076
4Y4P|1|2A|A|2077
*
4Y4P|1|2A|U|2243
4Y4P|1|2A|U|2244
4Y4P|1|2A|U|2245
4Y4P|1|2A|G|2246
*
4Y4P|1|2A|C|2258
4Y4P|1|2A|G|2259
*
4Y4P|1|2A|C|2281
4Y4P|1|2A|G|2282
*
4Y4P|1|2A|C|2427
4Y4P|1|2A|G|2428
4Y4P|1|2A|G|2429
4Y4P|1|2A|A|2430
4Y4P|1|2A|U|2431
4Y4P|1|2A|A|2432
4Y4P|1|2A|A|2433
4Y4P|1|2A|A|2434
4Y4P|1|2A|A|2435
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 21
- 50S ribosomal protein L28
- Chain 26
- 50S ribosomal protein L33
- Chain 28
- 50S ribosomal protein L35
- Chain 2D
- 50S ribosomal protein L2
- Chain 2P
- 50S ribosomal protein L15
- Chain 2y
- Transfer RNA; tRNA
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