J5_4YBB_007

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CGAUGAAGG*CCGAAUG*CA*UAU*AGG

Length

24 nucleotides

Bulged bases

4YBB|1|CA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4YBB|1|CA|C|47
4YBB|1|CA|G|48
4YBB|1|CA|A|49
4YBB|1|CA|U|50
4YBB|1|CA|G|51
4YBB|1|CA|A|52
4YBB|1|CA|A|53
4YBB|1|CA|G|54
4YBB|1|CA|G|55
*
4YBB|1|CA|C|115
4YBB|1|CA|C|116
4YBB|1|CA|G|117
4YBB|1|CA|A|118
4YBB|1|CA|A|119
4YBB|1|CA|U|120
4YBB|1|CA|G|121
*
4YBB|1|CA|C|130
4YBB|1|CA|A|131
*
4YBB|1|CA|U|148
4YBB|1|CA|A|149
4YBB|1|CA|U|150
*
4YBB|1|CA|A|176
4YBB|1|CA|G|177
4YBB|1|CA|G|178

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34