J5_4YBB_011
3D structure
- PDB id
- 4YBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.1 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 4YBB|1|CA|A|2062, 4YBB|1|CA|A|2448, 4YBB|1|CA|U|2449, 4YBB|1|CA|U|2585, 4YBB|1|CA|U|2609
- QA status
- Modified nucleotides: 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4YBB|1|CA|G|2057
4YBB|1|CA|A|2058
4YBB|1|CA|A|2059
4YBB|1|CA|A|2060
4YBB|1|CA|G|2061
4YBB|1|CA|A|2062
4YBB|1|CA|C|2063
4YBB|1|CA|C|2064
*
4YBB|1|CA|G|2446
4YBB|1|CA|G|2447
4YBB|1|CA|A|2448
4YBB|1|CA|U|2449
4YBB|1|CA|A|2450
4YBB|1|CA|A|2451
4YBB|1|CA|C|2452
4YBB|1|CA|A|2453
*
4YBB|1|CA|U|2500
4YBB|1|CA|C|2501
4YBB|1|CA|G|2502
4YBB|1|CA|2MA|2503
4YBB|1|CA|PSU|2504
4YBB|1|CA|G|2505
4YBB|1|CA|U|2506
*
4YBB|1|CA|G|2583
4YBB|1|CA|U|2584
4YBB|1|CA|U|2585
4YBB|1|CA|U|2586
4YBB|1|CA|A|2587
4YBB|1|CA|G|2588
*
4YBB|1|CA|C|2606
4YBB|1|CA|G|2607
4YBB|1|CA|G|2608
4YBB|1|CA|U|2609
4YBB|1|CA|C|2610
4YBB|1|CA|C|2611
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C1
- 50S ribosomal protein L32
- Chain CC
- 50S ribosomal protein L2
- Chain CD
- 50S ribosomal protein L3
- Chain CE
- 50S ribosomal protein L4
- Chain CM
- 50S ribosomal protein L15
- Chain CN
- 50S ribosomal protein L16
- Chain CT
- 50S ribosomal protein L22
Coloring options: