J5_4YHH_002

3D structure

PDB id

4YHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CAUGCAAG*CGGACGGG*CAG*CAC*GGCAGCAG

Length

30 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4YHH|1|A|C|54
4YHH|1|A|A|55
4YHH|1|A|U|56
4YHH|1|A|G|57
4YHH|1|A|C|58
4YHH|1|A|A|59
4YHH|1|A|A|60
4YHH|1|A|G|61
*
4YHH|1|A|C|106
4YHH|1|A|G|107
4YHH|1|A|G|108
4YHH|1|A|A|109
4YHH|1|A|C|110
4YHH|1|A|G|111
4YHH|1|A|G|112
4YHH|1|A|G|113
*
4YHH|1|A|C|314
4YHH|1|A|A|315
4YHH|1|A|G|316
*
4YHH|1|A|C|337
4YHH|1|A|A|338
4YHH|1|A|C|339
*
4YHH|1|A|G|350
4YHH|1|A|G|351
4YHH|1|A|C|352
4YHH|1|A|A|353
4YHH|1|A|G|354
4YHH|1|A|C|355
4YHH|1|A|A|356
4YHH|1|A|G|357

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20