J5_4YPB_007

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

4YPB|1|RA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4YPB|1|RA|C|601
4YPB|1|RA|G|602
4YPB|1|RA|A|603
4YPB|1|RA|G|604
*
4YPB|1|RA|C|624
4YPB|1|RA|G|625
4YPB|1|RA|U|626
4YPB|1|RA|A|627
4YPB|1|RA|G|628
*
4YPB|1|RA|C|635
4YPB|1|RA|G|636
4YPB|1|RA|A|637
4YPB|1|RA|G|638
*
4YPB|1|RA|C|650
4YPB|1|RA|G|651
4YPB|1|RA|C|652
4YPB|1|RA|A|653
4YPB|1|RA|A|654
4YPB|1|RA|G|654|||A
*
4YPB|1|RA|C|654|||T
4YPB|1|RA|A|654|||U
4YPB|1|RA|A|654|||V
4YPB|1|RA|A|655
4YPB|1|RA|G|656

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R8

50S ribosomal protein L35

Chain RF

50S ribosomal protein L4

Chain RP

50S ribosomal protein L15