J5_4YPB_009
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 4YPB|1|RA|A|2448, 4YPB|1|RA|U|2449, 4YPB|1|RA|U|2585, 4YPB|1|RA|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4YPB|1|RA|A|2057
4YPB|1|RA|A|2058
4YPB|1|RA|A|2059
4YPB|1|RA|A|2060
4YPB|1|RA|G|2061
4YPB|1|RA|A|2062
4YPB|1|RA|C|2063
4YPB|1|RA|C|2064
*
4YPB|1|RA|G|2446
4YPB|1|RA|G|2447
4YPB|1|RA|A|2448
4YPB|1|RA|U|2449
4YPB|1|RA|A|2450
4YPB|1|RA|A|2451
4YPB|1|RA|C|2452
4YPB|1|RA|A|2453
*
4YPB|1|RA|U|2500
4YPB|1|RA|C|2501
4YPB|1|RA|G|2502
4YPB|1|RA|A|2503
4YPB|1|RA|U|2504
4YPB|1|RA|G|2505
4YPB|1|RA|U|2506
4YPB|1|RA|C|2507
*
4YPB|1|RA|G|2582
4YPB|1|RA|G|2583
4YPB|1|RA|U|2584
4YPB|1|RA|U|2585
4YPB|1|RA|C|2586
4YPB|1|RA|A|2587
4YPB|1|RA|G|2588
*
4YPB|1|RA|C|2606
4YPB|1|RA|G|2607
4YPB|1|RA|G|2608
4YPB|1|RA|U|2609
4YPB|1|RA|C|2610
4YPB|1|RA|U|2611
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain QV
- Transfer RNA; tRNA
- Chain R0
- 50S ribosomal protein L27
- Chain R5
- 50S ribosomal protein L32
- Chain RD
- 50S ribosomal protein L2
- Chain RE
- 50S ribosomal protein L3
- Chain RF
- 50S ribosomal protein L4
- Chain RP
- 50S ribosomal protein L15
- Chain RW
- 50S ribosomal protein L22
Coloring options: